mirna data analysis software Search Results


mirna analysis tool in the ingenuity pathway analysis software  (Ingenuity Systems)
90
Ingenuity Systems mirna analysis tool in the ingenuity pathway analysis software
Global analysis of RNAs, miRNAs, and <t> miRNA:mRNA </t> pairs
Mirna Analysis Tool In The Ingenuity Pathway Analysis Software, supplied by Ingenuity Systems, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mirna+data+analysis+software/mirna+analysis+tool+in+the+ingenuity+pathway+analysis+software/pmc03852386-50-10-19
Average 90 stars, based on 1 article reviews
mirna analysis tool in the ingenuity pathway analysis software - by Bioz Stars, 2026-11
90/100 stars
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mirna data analysis software  (LC Sciences)
90
LC Sciences mirna data analysis software
Global analysis of RNAs, miRNAs, and <t> miRNA:mRNA </t> pairs
Mirna Data Analysis Software, supplied by LC Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mirna+data+analysis+software/mirna+data+analysis+software/pm39682333-81-1-9
Average 90 stars, based on 1 article reviews
mirna data analysis software - by Bioz Stars, 2026-11
90/100 stars
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pathway analysis (ipa) software mirna target filter tool  (Ingenuity Systems)
90
Ingenuity Systems pathway analysis (ipa) software mirna target filter tool
Thirty-One miRNAs Identified with Significant Differential Expression Associated with Exposure to Either IEPOX-Derived SOA or MAE-Derived SOA a
Pathway Analysis (Ipa) Software Mirna Target Filter Tool, supplied by Ingenuity Systems, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mirna+data+analysis+software/pathway+analysis++ipa++software+mirna+target+filter+tool/pmc07243464-103-0-9
Average 90 stars, based on 1 article reviews
pathway analysis (ipa) software mirna target filter tool - by Bioz Stars, 2026-11
90/100 stars
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Image Search Results


Global analysis of RNAs, miRNAs, and miRNA:mRNA pairs

Journal: G3: Genes|Genomes|Genetics

Article Title: Identification and Characterization of FGF2-Dependent mRNA: microRNA Networks During Lens Fiber Cell Differentiation

doi: 10.1534/g3.113.008698

Figure Lengend Snippet: Global analysis of RNAs, miRNAs, and miRNA:mRNA pairs

Article Snippet: The inverse miRNA:mRNA target correlation patterns were determined using the miRNA analysis tool in the Ingenuity Pathway Analysis software (Ingenuity Systems, Redwood City, CA).

Techniques:

Four sets of global GRNs. (A) “Early” up-miRNA:down-regulated mRNA. (B) “Late” up-miRNA:down-regulated mRNA. (C) “Early” down-miRNA:up-regulated mRNA. (D) “Late” down-miRNA:up-regulated mRNA. The diagrams were created using Cytoscape program as described in the Materials and Methods using only high-scoring and experimentally observed predictions. miRNA, triangles; mRNAs, circles; up-regulated (red); down-regulated (blue).

Journal: G3: Genes|Genomes|Genetics

Article Title: Identification and Characterization of FGF2-Dependent mRNA: microRNA Networks During Lens Fiber Cell Differentiation

doi: 10.1534/g3.113.008698

Figure Lengend Snippet: Four sets of global GRNs. (A) “Early” up-miRNA:down-regulated mRNA. (B) “Late” up-miRNA:down-regulated mRNA. (C) “Early” down-miRNA:up-regulated mRNA. (D) “Late” down-miRNA:up-regulated mRNA. The diagrams were created using Cytoscape program as described in the Materials and Methods using only high-scoring and experimentally observed predictions. miRNA, triangles; mRNAs, circles; up-regulated (red); down-regulated (blue).

Article Snippet: The inverse miRNA:mRNA target correlation patterns were determined using the miRNA analysis tool in the Ingenuity Pathway Analysis software (Ingenuity Systems, Redwood City, CA).

Techniques:

A “late” connectivity network. Ten miRNAs, miR-20b, miR-145, miR-152, miR-155, miR-181a, miR-203, miR-222, miR-301a, miR-324-5p, and miR-351. (A) DNA-binding transcription factors (c-Maf, Ets1, Nfat5/OREBP, and Stc1). (B) mRNA and protein processing (Cnot6, Dicer1, Fbxo33, and Wdr47). miRNA, triangles; mRNAs, circles; up-regulated (red); down-regulated (blue).

Journal: G3: Genes|Genomes|Genetics

Article Title: Identification and Characterization of FGF2-Dependent mRNA: microRNA Networks During Lens Fiber Cell Differentiation

doi: 10.1534/g3.113.008698

Figure Lengend Snippet: A “late” connectivity network. Ten miRNAs, miR-20b, miR-145, miR-152, miR-155, miR-181a, miR-203, miR-222, miR-301a, miR-324-5p, and miR-351. (A) DNA-binding transcription factors (c-Maf, Ets1, Nfat5/OREBP, and Stc1). (B) mRNA and protein processing (Cnot6, Dicer1, Fbxo33, and Wdr47). miRNA, triangles; mRNAs, circles; up-regulated (red); down-regulated (blue).

Article Snippet: The inverse miRNA:mRNA target correlation patterns were determined using the miRNA analysis tool in the Ingenuity Pathway Analysis software (Ingenuity Systems, Redwood City, CA).

Techniques: Binding Assay

FGF2-regulated miRNAs and posttranscriptional control of c-Maf. (A) Localization of miRNA-binding regions in the mouse c-Maf 3′-UTR (NCBI Reference Sequence NM_001025577.2) and their separation into three shorter regions, WT1 (~0.8 kb), WT2 (~0.2 kb), and WT3 (~0.5 kb). These regions are evolutionary conserved among mammals. (B) Sequence alignment of individual miRNAs:3′-UTR mRNA pairs. Watson-Crick (vertical lines) and wobble (G:U) base pairing are shown. The nucleotides changed in mutated reporter plasmids are highlighted in gray. (C) Luciferase reporter assays using the WT1, WT2, and WT3. (D) Luciferase reporter assays using specific mutants of WT1, WT2, and WT3 (see panel B).

Journal: G3: Genes|Genomes|Genetics

Article Title: Identification and Characterization of FGF2-Dependent mRNA: microRNA Networks During Lens Fiber Cell Differentiation

doi: 10.1534/g3.113.008698

Figure Lengend Snippet: FGF2-regulated miRNAs and posttranscriptional control of c-Maf. (A) Localization of miRNA-binding regions in the mouse c-Maf 3′-UTR (NCBI Reference Sequence NM_001025577.2) and their separation into three shorter regions, WT1 (~0.8 kb), WT2 (~0.2 kb), and WT3 (~0.5 kb). These regions are evolutionary conserved among mammals. (B) Sequence alignment of individual miRNAs:3′-UTR mRNA pairs. Watson-Crick (vertical lines) and wobble (G:U) base pairing are shown. The nucleotides changed in mutated reporter plasmids are highlighted in gray. (C) Luciferase reporter assays using the WT1, WT2, and WT3. (D) Luciferase reporter assays using specific mutants of WT1, WT2, and WT3 (see panel B).

Article Snippet: The inverse miRNA:mRNA target correlation patterns were determined using the miRNA analysis tool in the Ingenuity Pathway Analysis software (Ingenuity Systems, Redwood City, CA).

Techniques: Control, Binding Assay, Sequencing, Luciferase

Thirty-One miRNAs Identified with Significant Differential Expression Associated with Exposure to Either IEPOX-Derived SOA or MAE-Derived SOA a

Journal: Chemical research in toxicology

Article Title: Isoprene-Derived Secondary Organic Aerosol Induces the Expression of MicroRNAs Associated with Inflammatory/Oxidative Stress Response in Lung Cells

doi: 10.1021/acs.chemrestox.9b00322

Figure Lengend Snippet: Thirty-One miRNAs Identified with Significant Differential Expression Associated with Exposure to Either IEPOX-Derived SOA or MAE-Derived SOA a

Article Snippet: Ingenuity Pathway Analysis (IPA) software miRNA Target Filter tool (Ingenuity Systems, Inc., Redwood City, CA, United States) was used to identify two comprehensive lists of computationally predicted gene targets of the miRNAs differentially expressed in response to IEPOX- and MAE-derived SOA, respectively.

Techniques: Quantitative Proteomics

Log fold changes of miRNA expression when exposed to IEPOX- or MAE-derived SOA compared to acidified sulfate aerosol control.

Journal: Chemical research in toxicology

Article Title: Isoprene-Derived Secondary Organic Aerosol Induces the Expression of MicroRNAs Associated with Inflammatory/Oxidative Stress Response in Lung Cells

doi: 10.1021/acs.chemrestox.9b00322

Figure Lengend Snippet: Log fold changes of miRNA expression when exposed to IEPOX- or MAE-derived SOA compared to acidified sulfate aerosol control.

Article Snippet: Ingenuity Pathway Analysis (IPA) software miRNA Target Filter tool (Ingenuity Systems, Inc., Redwood City, CA, United States) was used to identify two comprehensive lists of computationally predicted gene targets of the miRNAs differentially expressed in response to IEPOX- and MAE-derived SOA, respectively.

Techniques: Expressing, Derivative Assay, Aerosol, Control